Tag Archives: evolution

Remembering Lynn Margulis: Pioneering Evolutionary Biologist

The world lost pioneering biologist Lynn Margulis on November 22.

One of her key contributions to biology, and in fact, to our overall understanding of the development of complex life, was her theory of the symbiotic origin of the nucleated cell, or symbiogenesis. Almost 50 years ago Margulis first argued that such complex nucleated, or eukaryotic, cells were formed from the association of different kinds of bacteria. Her idea was both radical and beautiful: that separate organisms, in this case ancestors of modern bacteria, would join together in a permanent relationship to form a new entity, a complex single cell.

Until fairly recently this idea was mostly dismissed by the scientific establishment. Nowadays her pioneering ideas on cell evolution through symbiosis are held as a fundamental scientific breakthrough.

We feature some excerpts below of Margulis’ writings:

[div class=attrib]From the Edge:[end-div]

At any fine museum of natural history — say, in New York, Cleveland, or Paris — the visitor will find a hall of ancient life, a display of evolution that begins with the trilobite fossils and passes by giant nautiloids, dinosaurs, cave bears, and other extinct animals fascinating to children. Evolutionists have been preoccupied with the history of animal life in the last five hundred million years. But we now know that life itself evolved much earlier than that. The fossil record begins nearly four thousand million years ago! Until the 1960s, scientists ignored fossil evidence for the evolution of life, because it was uninterpretable.

I work in evolutionary biology, but with cells and microorganisms. Richard Dawkins, John Maynard Smith, George Williams, Richard Lewontin, Niles Eldredge, and Stephen Jay Gould all come out of the zoological tradition, which suggests to me that, in the words of our colleague Simon Robson, they deal with a data set some three billion years out of date. Eldredge and Gould and their many colleagues tend to codify an incredible ignorance of where the real action is in evolution, as they limit the domain of interest to animals — including, of course, people. All very interesting, but animals are very tardy on the evolutionary scene, and they give us little real insight into the major sources of evolution’s creativity. It’s as if you wrote a four-volume tome supposedly on world history but beginning in the year 1800 at Fort Dearborn and the founding of Chicago. You might be entirely correct about the nineteenth-century transformation of Fort Dearborn into a thriving lakeside metropolis, but it would hardly be world history.

“codifying ignorance” I refer in part to the fact that they miss four out of the five kingdoms of life. Animals are only one of these kingdoms. They miss bacteria, protoctista, fungi, and plants. They take a small and interesting chapter in the book of evolution and extrapolate it into the entire encyclopedia of life. Skewed and limited in their perspective, they are not wrong so much as grossly uninformed.

Of what are they ignorant? Chemistry, primarily, because the language of evolutionary biology is the language of chemistry, and most of them ignore chemistry. I don’t want to lump them all together, because, first of all, Gould and Eldredge have found out very clearly that gradual evolutionary changes through time, expected by Darwin to be documented in the fossil record, are not the way it happened. Fossil morphologies persist for long periods of time, and after stasis, discontinuities are observed. I don’t think these observations are even debatable. John Maynard Smith, an engineer by training, knows much of his biology secondhand. He seldom deals with live organisms. He computes and he reads. I suspect that it’s very hard for him to have insight into any group of organisms when he does not deal with them directly. Biologists, especially, need direct sensory communication with the live beings they study and about which they write.

Reconstructing evolutionary history through fossils — paleontology — is a valid approach, in my opinion, but paleontologists must work simultaneously with modern-counterpart organisms and with “neontologists” — that is, biologists. Gould, Eldredge, and Lewontin have made very valuable contributions. But the Dawkins-Williams-Maynard Smith tradition emerges from a history that I doubt they see in its Anglophone social context. Darwin claimed that populations of organisms change gradually through time as their members are weeded out, which is his basic idea of evolution through natural selection. Mendel, who developed the rules for genetic traits passing from one generation to another, made it very clear that while those traits reassort, they don’t change over time. A white flower mated to a red flower has pink offspring, and if that pink flower is crossed with another pink flower the offspring that result are just as red or just as white or just as pink as the original parent or grandparent. Species of organisms, Mendel insisted, don’t change through time. The mixture or blending that produced the pink is superficial. The genes are simply shuffled around to come out in different combinations, but those same combinations generate exactly the same types. Mendel’s observations are incontrovertible.

[div class=attrib]Read the entire article here.[end-div]

[div class=attrib]Image: Lynn Margulis. Courtesy edge.org.[end-div]

Human Evolution Marches On

[div class=attrib]From Wired:[end-div]

Though ongoing human evolution is difficult to see, researchers believe they’ve found signs of rapid genetic changes among the recent residents of a small Canadian town.

Between 1800 and 1940, mothers in Ile aux Coudres, Quebec gave birth at steadily younger ages, with the average age of first maternity dropping from 26 to 22. Increased fertility, and thus larger families, could have been especially useful in the rural settlement’s early history.

According to University of Quebec geneticist Emmanuel Milot and colleagues, other possible explanations, such as changing cultural or environmental influences, don’t fit. The changes appear to reflect biological evolution.

“It is often claimed that modern humans have stopped evolving because cultural and technological advancements have annihilated natural selection,” wrote Milot’s team in their Oct. 3 Proceedings of the National Academy of Sciences paper. “Our study supports the idea that humans are still evolving. It also demonstrates that microevolution is detectable over just a few generations.”

Milot’s team based their study on detailed birth, marriage and death records kept by the Catholic church in Ile aux Coudres, a small and historically isolated French-Canadian island town in the Gulf of St. Lawrence. It wasn’t just the fact that average first birth age — a proxy for fertility — dropped from 26 to 22 in 140 years that suggested genetic changes. After all, culture or environment might have been wholly responsible, as nutrition and healthcare are for recent, rapid changes in human height. Rather, it was how ages dropped that caught their eye.

The patterns fit with models of gene-influenced natural selection. Moreover, thanks to the detailed record-keeping, it was possible to look at other possible explanations. Were better nutrition responsible, for example, improved rates of infant and juvenile mortality should have followed; they didn’t. Neither did the late-19th century transition from farming to more diversified professions.

[div class=attrib]Read more here.[end-div]

Cities Might Influence Not Just Our Civilizations, but Our Evolution

[div class=attrib]From Scientific American:[end-div]

Cities reverberate through history as centers of civilization. Ur. Babylon. Rome. Baghdad. Tenochtitlan. Beijing. Paris. London. New York. As pivotal as cities have been for our art and culture, our commerce and trade, our science and technology, our wars and peace, it turns out that cities might have been even more important than we had suspected, influencing our very genes and evolution.

Cities reverberate through history as centers of civilization. Ur. Babylon. Rome. Baghdad. Tenochtitlan. Beijing. Paris. London. New York. As pivotal as cities have been for our art and culture, our commerce and trade, our science and technology, our wars and peace, it turns out that cities might have been even more important than we had suspected, influencing our very genes and evolution.

Cities have been painted as hives of scum and villainy, dens of filth and squalor, with unsafe water, bad sanitation, industrial pollution and overcrowded neighborhoods. It turns out that by bringing people closer together and spreading disease, cities might increase the chance that, over time, the descendants of survivors could resist infections.

Evolutionary biologist Ian Barnes at the University of London and his colleagues focused on a genetic variant with the alphabet-soup name of SLC11A1 1729+55del4. This variant is linked with natural resistance to germs that dwell within cells, such as tuberculosis and leprosy.

The scientists analyzed DNA samples from 17 modern populations that had occupied their cities for various lengths of time. The cities ranged from Çatalhöyük in Turkey, settled in roughly 6000 B.C., to Juba in Sudan, settled in the 20th century.

The researchers discovered an apparently highly significant link between the occurrence of this genetic variant and the duration of urban settlement. People from a long-populated urban area often seemed better adapted to resisting these specific types of infections — for instance, those in areas settled for more than 5,200 years, such as Susa in Iran, were almost certain to possess this variant, while in cities settled for only a few hundred years, such as Yakutsk in Siberia, only 70 percent to 80 percent of people would have it.

[div class=attrib]More from theSource here.[end-div]

[div class=attrib]Image courtesy of Scientific American.[end-div]

Bad reasoning about reasoning

[div class=attrib]By Massimo Pigliucci at Rationally Speaking:[end-div]

A recent paper on the evolutionary psychology of reasoning has made mainstream news, with extensive coverage by the New York Times, among others. Too bad the “research” is badly flawed, and the lesson drawn by Patricia Cohen’s commentary in the Times is precisely the wrong one.

Readers of this blog and listeners to our podcast know very well that I tend to be pretty skeptical of evolutionary psychology in general. The reason isn’t because there is anything inherently wrong about thinking that (some) human behavioral traits evolved in response to natural selection. That’s just an uncontroversial consequence of standard evolutionary theory. The devil, rather, is in the details: it is next to impossible to test specific evopsych hypotheses because the crucial data are often missing. The fossil record hardly helps (if we are talking about behavior), there are precious few closely related species for comparison (and they are not at all that closely related), and the current ecological-social environment is very different from the “ERE,” the Evolutionarily Relevant Environment (which means that measuring selection on a given trait in today’s humans is pretty much irrelevant).
That said, I was curious about Hugo Mercier and Dan Sperber’s paper, “Why do humans reason? Arguments for an argumentative theory,” published in Behavioral and Brain Sciences (volume 34, pp. 57-111, 2011), which is accompanied by an extensive peer commentary. My curiosity was piqued in particular because of the Times’ headline from the June 14 article: “Reason Seen More as Weapon Than Path to Truth.” Oh crap, I thought.

Mercier and Sperber’s basic argument is that reason did not evolve to allow us to seek truth, but rather to win arguments with our fellow human beings. We are natural lawyers, not natural philosophers. This, according to them, explains why people are so bad at reasoning, for instance why we tend to fall for basic mistakes such as the well known confirmation bias — a tendency to seek evidence in favor of one’s position and discount contrary evidence that is well on display in politics and pseudoscience. (One could immediately raise the obvious “so what?” objection to all of this: language possibly evolved to coordinate hunting and gossip about your neighbor. That doesn’t mean we can’t take writing and speaking courses and dramatically improve on our given endowment, natural selection be damned.)

The first substantive thing to notice about the paper is that there isn’t a single new datum to back up the central hypothesis. It is one (long) argument in which the authors review well known cognitive science literature and simply apply evopsych speculation to it. If that’s the way to get into the New York Times, I better increase my speculation quotient.

[div class=attrib]More from theSource here.[end-div]

Undiscovered

[div class=attrib]From Eurozine:[end-div]

Neurological and Darwinistic strands in the philosophy of consciousness see human beings as no more than our evolved brains. Avoiding naturalistic explanations of human beings’ fundamental difference from other animals requires openness to more expansive approaches, argues Raymond Tallis.

For several decades I have been arguing against what I call biologism. This is the idea, currently dominant within secular humanist circles, that humans are essentially animals (or at least much more beastly than has been hitherto thought) and that we need therefore to look to the biological sciences, and only there, to advance our understanding of human nature. As a result of my criticism of this position I have been accused of being a Cartesian dualist, who thinks that the mind is some kind of a ghost in the machinery of the brain. Worse, it has been suggested that I am opposed to Darwinism, to neuroscience or to science itself. Worst of all, some have suggested that I have a hidden religious agenda. For the record, I regard neuroscience (which was my own area of research) as one of the greatest monuments of the human intellect; I think Cartesian dualism is a lost cause; and I believe that Darwin’s theory is supported by overwhelming evidence. Nor do I have a hidden religious agenda: I am an atheist humanist. And this is in fact the reason why I have watched the rise of biologism with such dismay: it is a consequence of the widespread assumption that the only alternative to a supernatural understanding of human beings is a strictly naturalistic one that sees us as just another kind of beast and, ultimately, as being less conscious agents than pieces of matter stitched into the material world.

This is to do humanity a gross disservice, as I think we are so much more than gifted chimps. Unpacking the most “ordinary” moment of human life reveals knowledge, skills, emotions, intuitions, a sense of past and future and of an infinitely elaborated world, that are not to be found elsewhere in the living world.

Biologism has two strands: “Neuromania” and “Darwinitis”. Neuromania arises out of the belief that human consciousness is identical with neural activity in certain parts of the brain. It follows from this that the best way to investigate what we humans truly are, to understand the origins of our beliefs, our predispositions, our morality and even our aesthetic pleasures, will be to peer into the brains of human subjects using the latest scanning technology. This way we shall know what is really going on when we are having experiences, thinking thoughts, feeling emotions, remembering memories, making decisions, being wise or silly, breaking the law, falling in love and so on.

The other strand is Darwinitis, rooted in the belief that evolutionary theory not only explains the origin of the species H. sapiens – which it does, of course – but also explains humans as they are today; that people are at bottom the organisms forged by the processes of natural selection and nothing more.

[div class=attrib]More from theSource here.[end-div]

Evolution machine: Genetic engineering on fast forward

[div class=attrib]From the New Scientist:[end-div]

Automated genetic tinkering is just the start – this machine could be used to rewrite the language of life and create new species of humans

IT IS a strange combination of clumsiness and beauty. Sitting on a cheap-looking worktop is a motley ensemble of flasks, trays and tubes squeezed onto a home-made frame. Arrays of empty pipette tips wait expectantly. Bunches of black and grey wires adorn its corners. On the top, robotic arms slide purposefully back and forth along metal tracks, dropping liquids from one compartment to another in an intricately choreographed dance. Inside, bacteria are shunted through slim plastic tubes, and alternately coddled, chilled and electrocuted. The whole assembly is about a metre and a half across, and controlled by an ordinary computer.

Say hello to the evolution machine. It can achieve in days what takes genetic engineers years. So far it is just a prototype, but if its proponents are to be believed, future versions could revolutionise biology, allowing us to evolve new organisms or rewrite whole genomes with ease. It might even transform humanity itself.

These days everything from your food and clothes to the medicines you take may well come from genetically modified plants or bacteria. The first generation of engineered organisms has been a huge hit with farmers and manufacturers – if not consumers. And this is just the start. So far organisms have only been changed in relatively crude and simple ways, often involving just one or two genes. To achieve their grander ambitions, such as creating algae capable of churning out fuel for cars, genetic engineers are now trying to make far more sweeping changes.

[div class=attrib]More from theSource here.[end-div]

The Top Ten Daily Consequences of Having Evolved

[div class=attrib]From Smithsonian.com:[end-div]

Natural selection acts by winnowing the individuals of each generation, sometimes clumsily, as old parts and genes are co-opted for new roles. As a result, all species inhabit bodies imperfect for the lives they live. Our own bodies are worse off than most simply because of the many differences between the wilderness in which we evolved and the modern world in which we live. We feel the consequences every day. Here are ten.

1. Our cells are weird chimeras
Perhaps a billion years ago, a single-celled organism arose that would ultimately give rise to all of the plants and animals on Earth, including us. This ancestor was the result of a merging: one cell swallowed, imperfectly, another cell. The predator provided the outsides, the nucleus and most of the rest of the chimera. The prey became the mitochondrion, the cellular organ that produces energy. Most of the time, this ancient symbiosis proceeds amicably. But every so often, our mitochondria and their surrounding cells fight. The result is diseases, such as mitochondrial myopathies (a range of muscle diseases) or Leigh’s disease (which affects the central nervous system).

2. Hiccups
The first air-breathing fish and amphibians extracted oxygen using gills when in the water and primitive lungs when on land—and to do so, they had to be able to close the glottis, or entryway to the lungs, when underwater. Importantly, the entryway (or glottis) to the lungs could be closed. When underwater, the animals pushed water past their gills while simultaneously pushing the glottis down. We descendants of these animals were left with vestiges of their history, including the hiccup. In hiccupping, we use ancient muscles to quickly close the glottis while sucking in (albeit air, not water). Hiccups no longer serve a function, but they persist without causing us harm—aside from frustration and occasional embarrassment. One of the reasons it is so difficult to stop hiccupping is that the entire process is controlled by a part of our brain that evolved long before consciousness, and so try as you might, you cannot think hiccups away.

3. Backaches
The backs of vertebrates evolved as a kind of horizontal pole under which guts were slung. It was arched in the way a bridge might be arched, to support weight. Then, for reasons anthropologists debate long into the night, our hominid ancestors stood upright, which was the bodily equivalent of tipping a bridge on end. Standing on hind legs offered advantages—seeing long distances, for one, or freeing the hands to do other things—but it also turned our backs from an arched bridge to an S shape. The letter S, for all its beauty, is not meant to support weight and so our backs fail, consistently and painfully.

[div class=attrib]More from theSource here.[end-div]

Immaculate creation: birth of the first synthetic cell

[div class=attrib]From the New Scientist:[end-div]

For the first time, scientists have created life from scratch – well, sort of. Craig Venter‘s team at the J. Craig Venter Institute in Rockville, Maryland, and San Diego, California, has made a bacterial genome from smaller DNA subunits and then transplanted the whole thing into another cell. So what exactly is the science behind the first synthetic cell, and what is its broader significance?

What did Venter’s team do?

The cell was created by stitching together the genome of a goat pathogen called Mycoplasma mycoides from smaller stretches of DNA synthesised in the lab, and inserting the genome into the empty cytoplasm of a related bacterium. The transplanted genome booted up in its host cell, and then divided over and over to make billions of M. mycoides cells.

Venter and his team have previously accomplished both feats – creating a synthetic genome and transplanting a genome from one bacterium into another – but this time they have combined the two.

“It’s the first self-replicating cell on the planet that’s parent is a computer,” says Venter, referring to the fact that his team converted a cell’s genome that existed as data on a computer into a living organism.

How can they be sure that the new bacteria are what they intended?

Venter and his team introduced several distinctive markers into their synthesised genome. All of them were found in the synthetic cell when it was sequenced.

These markers do not make any proteins, but they contain the names of 46 scientists on the project and several quotations written out in a secret code. The markers also contain the key to the code.

Crack the code and you can read the messages, but as a hint, Venter revealed the quotations: “To live, to err, to fall, to triumph, to recreate life out of life,” from James Joyce’s A Portrait of the Artist as a Young Man; “See things not as they are but as they might be,” which comes from American Prometheus, a biography of nuclear physicist Robert Oppenheimer; and Richard Feynman’s famous words: “What I cannot build I cannot understand.”

Does this mean they created life?

It depends on how you define “created” and “life”. Venter’s team made the new genome out of DNA sequences that had initially been made by a machine, but bacteria and yeast cells were used to stitch together and duplicate the million base pairs that it contains. The cell into which the synthetic genome was then transplanted contained its own proteins, lipids and other molecules.

Venter himself maintains that he has not created life . “We’ve created the first synthetic cell,” he says. “We definitely have not created life from scratch because we used a recipient cell to boot up the synthetic chromosome.”

Whether you agree or not is a philosophical question, not a scientific one as there is no biological difference between synthetic bacteria and the real thing, says Andy Ellington, a synthetic biologist at the University of Texas in Austin. “The bacteria didn’t have a soul, and there wasn’t some animistic property of the bacteria that changed,” he says.

What can you do with a synthetic cell?

Venter’s work was a proof of principle, but future synthetic cells could be used to create drugs, biofuels and other useful products. He is collaborating with Exxon Mobil to produce biofuels from algae and with Novartis to create vaccines.

“As soon as next year, the flu vaccine you get could be made synthetically,” Venter says.

Ellington also sees synthetic bacteria as having potential as a scientific tool. It would be interesting, he says, to create bacteria that produce a new amino acid – the chemical units that make up proteins – and see how these bacteria evolve, compared with bacteria that produce the usual suite of amino acids. “We can ask these questions about cyborg cells in ways we never could before.”

[div class=attrib]More from theSource here.[end-div]

Human Culture, an Evolutionary Force

[div class=attrib]From The New York Times:[end-div]

As with any other species, human populations are shaped by the usual forces of natural selection, like famine, disease or climate. A new force is now coming into focus. It is one with a surprising implication — that for the last 20,000 years or so, people have inadvertently been shaping their own evolution.

The force is human culture, broadly defined as any learned behavior, including technology. The evidence of its activity is the more surprising because culture has long seemed to play just the opposite role. Biologists have seen it as a shield that protects people from the full force of other selective pressures, since clothes and shelter dull the bite of cold and farming helps build surpluses to ride out famine.

Because of this buffering action, culture was thought to have blunted the rate of human evolution, or even brought it to a halt, in the distant past. Many biologists are now seeing the role of culture in a quite different light.

Although it does shield people from other forces, culture itself seems to be a powerful force of natural selection. People adapt genetically to sustained cultural changes, like new diets. And this interaction works more quickly than other selective forces, “leading some practitioners to argue that gene-culture co-evolution could be the dominant mode of human evolution,” Kevin N. Laland and colleagues wrote in the February issue of Nature Reviews Genetics. Dr. Laland is an evolutionary biologist at the University of St. Andrews in Scotland.

The idea that genes and culture co-evolve has been around for several decades but has started to win converts only recently. Two leading proponents, Robert Boyd of the University of California, Los Angeles, and Peter J. Richerson of the University of California, Davis, have argued for years that genes and culture were intertwined in shaping human evolution. “It wasn’t like we were despised, just kind of ignored,” Dr. Boyd said. But in the last few years, references by other scientists to their writings have “gone up hugely,” he said.

The best evidence available to Dr. Boyd and Dr. Richerson for culture being a selective force was the lactose tolerance found in many northern Europeans. Most people switch off the gene that digests the lactose in milk shortly after they are weaned, but in northern Europeans — the descendants of an ancient cattle-rearing culture that emerged in the region some 6,000 years ago — the gene is kept switched on in adulthood.

Lactose tolerance is now well recognized as a case in which a cultural practice — drinking raw milk — has caused an evolutionary change in the human genome. Presumably the extra nutrition was of such great advantage that adults able to digest milk left more surviving offspring, and the genetic change swept through the population.

[div class=attrib]More from theSource here.[end-div]

Five Big Additions to Darwin’s Theory of Evolution

[div class=attrib]From Discover:[end-div]

Charles Darwin would have turned 200 in 2009, the same year his book On the Origin of Species celebrated its 150th anniversary. Today, with the perspective of time, Darwin’s theory of evolution by natural selection looks as impressive as ever. In fact, the double anniversary year saw progress on fronts that Darwin could never have anticipated, bringing new insights into the origin of life—a topic that contributed to his panic attacks, heart palpitations, and, as he wrote, “for 25 years extreme spasmodic daily and nightly flatulence.” One can only dream of what riches await in the biology textbooks of 2159.

1. Evolution happens on the inside, too. The battle for survival is waged not just between the big dogs but within the dog itself, as individual genes jockey for prominence. From the moment of conception, a father’s genes favor offspring that are large, strong, and aggressive (the better to court the ladies), while the mother’s genes incline toward smaller progeny that will be less of a burden, making it easier for her to live on and procreate. Genome-versus-genome warfare produces kids that are somewhere in between.

Not all genetic conflicts are resolved so neatly. In flour beetles, babies that do not inherit the selfish genetic element known as Medea succumb to a toxin while developing in the egg. Some unborn mice suffer the same fate. Such spiteful genes have become widespread not by helping flour beetles and mice survive but by eliminating individuals that do not carry the killer’s code. “There are two ways of winning a race,” says Caltech biologist Bruce Hay. “Either you can be better than everyone else, or you can whack the other guys on the legs.”

Hay is trying to harness the power of such genetic cheaters, enlisting them in the fight against malaria. He created a Medea-like DNA element that spreads through experimental fruit flies like wildfire, permeating an entire population within 10 generations. This year he and his team have been working on encoding immune-system boosters into those Medea genes, which could then be inserted into male mosquitoes. If it works, the modified mosquitoes should quickly replace competitors who do not carry the new genes; the enhanced immune systems of the new mosquitoes, in turn, would resist the spread of the malaria parasite.

2. Identity is not written just in the genes. According to modern evolutionary theory, there is no way that what we eat, do, and encounter can override the basic rules of inheritance: What is in the genes stays in the genes. That single rule secured Darwin’s place in the science books. But now biologists are finding that nature can break those rules. This year Eva Jablonka, a theoretical biologist at Tel Aviv University, published a compendium of more than 100 hereditary changes that are not carried in the DNA sequence. This “epigenetic” inheritance spans bacteria, fungi, plants, and animals.

[div class=attrib]More from theSource here.[end-div]

The Biocentric Universe Theory: Life Creates Time, Space, and the Cosmos Itself

[div class=attrib]From Discover:[end-div]

The farther we peer into space, the more we realize that the nature of the universe cannot be understood fully by inspecting spiral galaxies or watching distant supernovas. It lies deeper. It involves our very selves.

This insight snapped into focus one day while one of us (Lanza) was walking through the woods. Looking up, he saw a huge golden orb web spider tethered to the overhead boughs. There the creature sat on a single thread, reaching out across its web to detect the vibrations of a trapped insect struggling to escape. The spider surveyed its universe, but everything beyond that gossamer pinwheel was incomprehensible. The human observer seemed as far-off to the spider as telescopic objects seem to us. Yet there was something kindred: We humans, too, lie at the heart of a great web of space and time whose threads are connected according to laws that dwell in our minds.

Is the web possible without the spider? Are space and time physical objects that would continue to exist even if living creatures were removed from the scene?

Figuring out the nature of the real world has obsessed scientists and philosophers for millennia. Three hundred years ago, the Irish empiricist George Berkeley contributed a particularly prescient observation: The only thing we can perceive are our perceptions. In other words, consciousness is the matrix upon which the cosmos is apprehended. Color, sound, temperature, and the like exist only as perceptions in our head, not as absolute essences. In the broadest sense, we cannot be sure of an outside universe at all.

For centuries, scientists regarded Berkeley’s argument as a philosophical sideshow and continued to build physical models based on the assumption of a separate universe “out there” into which we have each individually arrived. These models presume the existence of one essential reality that prevails with us or without us. Yet since the 1920s, quantum physics experiments have routinely shown the opposite: Results do depend on whether anyone is observing. This is perhaps most vividly illustrated by the famous two-slit experiment. When someone watches a subatomic particle or a bit of light pass through the slits, the particle behaves like a bullet, passing through one hole or the other. But if no one observes the particle, it exhibits the behavior of a wave that can inhabit all possibilities—including somehow passing through both holes at the same time.

Some of the greatest physicists have described these results as so confounding they are impossible to comprehend fully, beyond the reach of metaphor, visualization, and language itself. But there is another interpretation that makes them sensible. Instead of assuming a reality that predates life and even creates it, we propose a biocentric picture of reality. From this point of view, life—particularly consciousness—creates the universe, and the universe could not exist without us.

[div class=attrib]More from theSource here.[end-div]

Evolution by Intelligent Design

[div class=attrib]From Discover:[end-div]

“There are no shortcuts in evolution,” famed Supreme Court justice Louis Brandeis once said. He might have reconsidered those words if he could have foreseen the coming revolution in biotechnology, including the ability to alter genes and manipulate stem cells. These breakthroughs could bring on an age of directed reproduction and evolution in which humans will bypass the incremental process of natural selection and set off on a high-speed genetic course of their own. Here are some of the latest and greatest advances.

Embryos From the Palm of Your Hand
In as little as five years, scientists may be able to create sperm and egg cells from any cell in the body, enabling infertile couples, gay couples, or sterile people to reproduce. The technique could also enable one person to provide both sperm and egg for an offspring—an act of “ultimate incest,” according to a report from the Hinxton Group, an international consortium of scientists and bioethicists whose members include such heavyweights as Ruth Faden, director of the Johns Hopkins Berman Institute of Bioethics, and Peter J. Donovan, a professor of biochemistry at the University of California at Irvine.

The Hinxton Group’s prediction comes in the wake of recent news that scientists at the University of Wisconsin and Kyoto University in Japan have transformed adult human skin cells into pluripotent stem cells, the powerhouse cells that can self-replicate (perhaps indefinitely) and develop into almost any kind of cell in the body. In evolutionary terms, the ability to change one type of cell into others—including a sperm or egg cell, or even an embryo—means that humans can now wrest control of reproduction away from nature, notes Robert Lanza, a scientist at Advanced Cell Technology in Massachusetts. “With this breakthrough we now have a working technology whereby anyone can pass on their genes to a child by using just a few skin cells,” he says.

[div class=attrib]More from theSource here.[end-div]

A Simpler Origin for Life

[div class=attrib]From Scientific American:[end-div]

Extraordinary discoveries inspire extraordinary claims. Thus, James Watson reported that immediately after he and Francis Crick uncovered the structure of DNA, Crick “winged into the Eagle (pub) to tell everyone within hearing that we had discovered the secret of life.” Their structure–an elegant double helix–almost merited such enthusiasm. Its proportions permitted information storage in a language in which four chemicals, called bases, played the same role as 26 letters do in the English language.

Further, the information was stored in two long chains, each of which specified the contents of its partner. This arrangement suggested a mechanism for reproduction: The two strands of the DNA double helix parted company, and new DNA building blocks that carry the bases, called nucleotides, lined up along the separated strands and linked up. Two double helices now existed in place of one, each a replica of the original.

[div class=attrib]More from theSource here.[end-div]

Evolved for Cancer?

[div class=attrib]From Scientific American:[end-div]

Natural selection lacks the power to erase cancer from our species and, some scientists argue, may even have provided tools that help tumors grow.

Natural selection is not natural perfection. Living creatures have evolved some remarkably complex adaptations, but we are still very vulnerable to disease. Among the most tragic of those ills–and perhaps most enigmatic–is cancer. A cancerous tumor is exquisitely well adapted for survival in its own grotesque way. Its cells continue to divide long after ordinary cells would stop. They destroy surrounding tissues to make room for themselves, and they trick the body into supplying them with energy to grow even larger. But the tumors that afflict us are not foreign parasites that have acquired sophisticated strategies for attacking our bodies. They are made of our own cells, turned against us. Nor is cancer some bizarre rarity: a woman in the U.S. has a 39 percent chance of being diagnosed with some type of cancer in her lifetime. A man has a 45 percent chance.

These facts make cancer a grim yet fascinating puzzle for evolutionary biologists. If natural selection is powerful enough to produce complex adaptations, from the eye to the immune system, why has it been unable to wipe out cancer? The answer, these investigators argue, lies in the evolutionary process itself. Natural selection has favored certain defenses against cancer but cannot eliminate it altogether. Ironically, natural selection may even inadvertently provide some of the tools that cancer cells can use to grow.

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